Pockets

Pockets

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Nucleosome containing a nick at SHL-6Homo sapiens

Structure Details

MethodEM

Resolution2.8 Å

Molecular Weight199.34 kDa

Chain Count11

ClassificationDNA BINDING PROTEIN/DNA

Deposition DateFeb 12, 2026

Download CIF View on RCSB PDB

Rank	Score	Volume (\u00c5\u00b3)	Center X	Center Y	Center Z
1	14.21	3755.9	148.2	115.7	163.2
2	13.25	4016.3	137.8	162.7	101.9
3	13.19	3484.3	129.7	171.9	127.4
4	12.57	3704.1	153.8	170.5	153.8
5	12.49	3437.3	110.5	132.8	89.4
6	11.47	3166.0	121.0	131.3	166.6
7	10.99	2623.1	112.8	97.2	132.1
8	10.79	3094.0	144.2	136.3	86.2
9	10.33	2936.5	111.4	100.0	105.6
10	9.90	2877.6	115.4	104.1	116.1
11	9.19	2673.5	110.2	147.8	168.1
12	9.12	2711.6	140.7	91.0	121.1
13	8.65	2405.6	138.2	97.1	151.7
14	8.32	2222.4	141.7	154.8	162.9
15	8.24	2218.0	128.3	121.8	131.4
16	7.96	1980.1	116.7	172.4	146.5
17	7.72	1829.3	135.0	147.3	140.6
18	7.52	2030.5	151.8	104.6	104.0
19	7.49	2337.3	143.7	132.5	164.6
20	7.43	2077.1	120.5	112.3	90.2
21	7.30	1810.4	145.0	107.3	154.8
22	7.29	2046.8	119.4	147.7	78.2
23	7.14	1900.1	127.6	116.2	124.2
24	7.10	1650.0	143.7	170.5	136.6
25	7.02	1811.5	134.6	138.1	95.4
26	6.98	1832.4	149.1	146.5	163.9
27	6.95	1604.5	146.6	101.8	140.7
28	6.67	1705.6	131.3	161.6	111.4
29	6.64	1788.1	152.1	92.6	135.4
30	6.56	1771.4	152.2	141.2	171.7
31	6.51	1662.6	122.5	172.8	111.8
32	6.41	1683.1	144.6	187.9	137.1
33	6.23	1696.5	123.5	90.0	117.8
34	6.09	1503.1	109.6	111.9	163.5
35	5.95	1447.4	118.6	113.3	101.9
36	5.77	1426.1	147.9	134.5	162.4
37	5.57	1366.8	117.1	133.8	135.5
38	5.38	1209.9	139.3	151.9	120.3
39	5.36	1150.1	128.7	118.4	146.9
40	5.34	1322.4	137.1	124.9	172.0
41	5.32	1290.0	114.9	103.3	145.7
42	5.17	1075.1	141.8	103.3	115.3
43	5.06	928.3	128.2	127.9	111.1
44	4.99	1004.3	120.5	162.1	149.7
45	4.94	1098.1	108.5	109.0	108.6
46	4.92	1098.0	125.7	130.5	116.4
47	4.90	1098.8	122.5	149.6	117.9
48	4.71	995.8	152.2	143.8	139.7
49	4.69	984.9	134.6	121.7	131.1
50	4.62	837.8	144.5	108.1	132.5
51	4.56	749.3	121.0	97.5	127.1
52	4.52	770.6	129.0	149.8	89.8
53	4.51	892.8	126.2	161.2	153.8
54	4.16	700.1	150.6	117.4	113.2
55	4.13	714.9	123.5	141.1	133.7
56	3.66	1481.1	120.9	182.1	142.4
57	2.97	933.0	138.3	154.7	130.0
58	2.77	814.9	141.9	179.8	138.2
59	2.34	749.8	105.7	115.2	131.2
60	2.29	797.1	134.1	109.9	138.5
61	2.15	712.6	120.8	146.4	83.3
62	1.94	618.6	139.7	125.6	154.7